Paper:DNA-nanoparticle superlattices formed from anisotropic building blocks

This is a summary/discussion of the results from:

• Matthew R. Jones, Robert J. Macfarlane, Byeongdu Lee, Jian Zhang, Kaylie L. Young, Andrew J. Senesi, and Chad A. Mirkin DNA-nanoparticle superlattices formed from anisotropic building blocks Nature Materials 2010, 9, 913-917 doi: 10.1038/nmat2870

This paper describes the formation of nanoparticle [[superlattices] from anisotropic nano-objects. In the Supplementary Information information, the authors describe how to model x-ray scattering data from lattices of anisotropic nanoparticles.

Summary of Mathematics

Randomly oriented crystals give scattering intensity:

Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle \begin{alignat}{2} I(q) & = \langle |F(\mathbf{q})|^2 S(\mathbf{q}) \rangle \\ & = P(q) \left\langle \frac{|F(\mathbf{q})|^2}{P(q)} S(\mathbf{q}) \right\rangle \\ & = P(q)S(q) \end{alignat} }

Where the structure factor is defined by an orientational average (randomly oriented crystal(s)):

Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle S(q) \equiv \left\langle \frac{|F(\mathbf{q})|^2}{P(q)} S(\mathbf{q}) \right\rangle }

and can be computed by:

Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle S(q) = \frac{c}{ q_{hkl}^2P(q_{hkl}) } \sum_{ \{hkl\} }^{m_{hkl} } \left|F(M \cdot \mathbf{q}_{hkl}) \sum_{i=1}^{n_c} e^{2\pi i(x_ih+y_ik+z_il)} \right|^2 e^{-\sigma_D^2q_{hkl}^2a^2} L_{hkl}(q-q_{hkl}) }

Where c is a constant, and L is the peak shape; such as:

Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle L = \frac{\sigma_L/(2\pi)}{(q-q_{hkl})^2 + (\sigma_L/2)^2} }

The (isotropic) form factor intensity is an average over all possible particle orientations:

${\begin{alignedat}{2}P(q)&=\left\langle |F(\mathbf {q} )|^{2}\right\rangle \\&=\int \limits _{S}|F(\mathbf {q} )|^{2}\mathrm {d} \mathbf {s} \\&=\int _{\phi =0}^{2\pi }\int _{\theta =0}^{\pi }|F(-q\sin \theta \cos \phi ,q\sin \theta \sin \phi ,q\cos \theta )|^{2}\sin \theta \mathrm {d} \theta \mathrm {d} \phi \end{alignedat}}$

The form factor amplitude is computed via:

Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle \begin{alignat}{2} F(\mathbf{q}) & = \int\limits_V e^{i \mathbf{q} \cdot \mathbf{r} } \mathrm{d}\mathbf{r} \\ \end{alignat} }